About us
Learn how GA4GH helps expand responsible genomic data use to benefit human health.
Large-Scale Genomics (LSG) Work Stream
Past Work Stream
Genomic sequencing generates data at an increasingly large scale. As public and national health systems continue to adopt genomic testing and more private companies launch genomic projects, the vast quantity of raw sequencing data will only balloon further. The Large-Scale Genomics (LSG) Work Stream has built and maintained robust, standardised ways to describe, store, and access this vital genomic information.
As part of a larger effort to adapt GA4GH to meet the evolving field of genomics, the Large-Scale Genomics Work Stream is now retired and its portfolio integrated into other existing GA4GH Work Streams. You may now find information about its products in the following places:
- File Formats (Genomic Knowledge Standards Work Stream)
- Whole Genome Sequencing Quality Control Standards (Genomic Knowledge Standards Work Stream)
- Future of VCF (Genomic Knowledge Standards Work Stream)
- Refget (Federated Analysis Work Stream)
- Refget Sequence Collections (Federated Analysis Work Stream)
- Htsget (Federated Analysis Work Stream)
- Crypt4GH (Data Security Work Stream)
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Past Work Stream
This Work Stream has now concluded. You can still explore its outputs, publications and related resources.
Publications
Community Resources
This Work Stream has now concluded. You can still investigate the resources of the work stream for archive and historical purposes.
Date
Title
Info
29 Feb 2024
Please review the document by Wednesday, 30 March 2024.
15 Feb 2023
Please review and provide your feedback for CRAM v3.1 and refget v2.0 by 14 March 2023.
27 Oct 2022
Please submit feedback by Thursday, 1 December 2022, at 17:00 UTC.
Date
Title
17 Sep 2025
27 Aug 2024
24 May 2024
7 Nov 2023
19 Sep 2023
14 Sep 2023
14 Sep 2023
11 Mar 2023
11 Mar 2023
11 Mar 2023
11 Mar 2023
11 Mar 2023
11 Mar 2023
10 Mar 2023
25 Sep 2022
4 Jan 2022
4 Jan 2022
12 Dec 2020
8 Dec 2020
8 Dec 2020
8 Dec 2020
8 Dec 2020
8 Dec 2020
26 Apr 2019
Don't see your name? Get in touch:
- Jeremy Adams
Ontario Institute for Cancer Research (OICR), Toronto, Canada - Shakuntala Baichoo
University of Mauritius - Dixie Baker
Martin, Blanck and Associates - Michael Baudis
University of Zurich, Zurich - Edmon Begoli
Oak Ridge National Laboratory (ORNL), Oak Ridge - Nicolas Bertin
Genome Institute of Singapore, Singapore - James Bonfield
Wellcome Sanger Institute (WSI), Hinxton, UK - Guillaume Bourque
McGill University / Université McGill, Montréal, Canada - David Bujold
McGill University / Université McGill, Montréal, Canada - Daniel Cameron
Walter and Eliza Hall Institute of Medical Research, Parkville - Timothe Cezard
EMBL's European Bioinformatics Institute (EBI), Hinxton, UK - Shu Hui Chen
NIH National Heart, Lung, and Blood Institute (NHLBI), Bethesda - Guy Cochrane
Independent Contributor - Robert Davies
Wellcome Sanger Institute (WSI), Hinxton, UK - Richard Durbin
University of Cambridge, Cambridge - Yossi Farjoun
Lady Davis Institute - Mallory Freeberg
EMBL's European Bioinformatics Institute (EBI), Hinxton, UK - Kais Ghedira
Institut Pasteur de Tunis - Romain Gregoire
Canadian Centre for Computational Genomics - Roderic Guigo
Centre for Genomic Regulation, Barcelona - Sveinung Gundersen
Centre for Bioinformatics, University of Oslo - Yosr Hamdi
Institut Pasteur de Tunis - Reece Hart
MyOme - Muhammad Haseeb
EMBL's European Bioinformatics Institute (EBI), Hinxton, UK - Frédéric Haziza
Centre for Genomic Regulation, Barcelona - Michael Hoffman
Princess Margaret Cancer Centre - Oliver Hofmann
University of Melbourne Centre for Cancer Research, Melbourne - David Jackson
Wellcome Sanger Institute (WSI), Hinxton, UK - Thomas Keane
EMBL's European Bioinformatics Institute (EBI), Hinxton, UK - Jerome Kelleher
University of Oxford, Oxford - Rasko Leinonen
EMBL's European Bioinformatics Institute (EBI), Hinxton, UK - Anders Leung
Independent Contributor - Mike Lin
Independent Contributor - John Marshall
Centre for Population Genomics - Emilio Palumbo
Centre for Genomic Regulation, Barcelona - Martin Pollard
Wellcome Sanger Institute (WSI), Hinxton, UK - Shaikh Farhan Rashid
University Health Network, Toronto, Canada, Canadian Distributed Infrastructure for Genomics (CanDIG) - Emilio Righi
Centre for Genomic Regulation, Barcelona - Nathan Sheffield
University of Virginia - Albert Smith
University of Michigan, Ann Arbor, MI, USA - Jing Su
Wellcome Sanger Institute (WSI), Hinxton, UK - Ole Schulz Trieglaff
Illumina, Inc., San Diego - Sean Upchurch
California Institute of Technology, Pasadena - Roman Valls Guimera
University of Melbourne Centre for Cancer Research, Melbourne - Zhenyu Zhang
University of Chicago, Chicago
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