Monarch Initiative

Provides community developed standards and tools to translate data into rare diseases breakthroughs

The Monarch Initiative is an international consortium that integrates knowledge using ontologies and AI, promoting an open ecosystem of multi-modal phenotyping data and standards to accelerate rare disease diagnostics, treatment discovery, and clinical decision support. Monarch has led the development of Phenopackets, the Mondo Disease Ontology (a GA4GH endorsed standard), and other standards such as LinkML that can aid standards development.

Monarch Initiative information
Driver Project Website
Location
International
Thematic Area
Champions
  • Matt Brush
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The Exomiser

The Exomiser is a Java program that functionally annotates variants from whole-exome-sequencing data in VCF v4.0 format. The functional annotation is performed with Jannovar and uses UCSC KnownGene transcript definitions and hg19 genomic coordinates.

Products Used
Clinical & Phenotypic Data Capture (Clin/Pheno) Work Stream
Genomic Knowledge Standards (GKS) Work Stream