Analysing data across the world can make genomics research more powerful by connecting many large-scale datasets for simultaneous analysis. Such investigations use complex methods, like aligning multiple sequences to the human reference genome to identify potentially pathogenic variants. These analyses often involve up to hundreds of thousands of computational tasks, which can take considerable time and compute power to execute. Developed by the GA4GH Cloud Work Stream, the Task Execution Service (TES) API provides a standard mechanism for orchestrating these complex analyses across different compute environments.

Image summary -
Benefits
- Connects complex workflow engines to new compute systems, saving time and resources
- Enables federated analysis
- Can be implemented in both cloud environments and high performance computing systems
Target users
Researchers
Announcements
| Title | Related Driver Projects and Organisations |
|---|---|
| ELIXIR BioContainers | |
| ELIXIR Cloud & AAI | ELIXIR Cloud and AAI |
| ELIXIR-Beacon | ELIXIR Beacon |
| Funnel | Oregon Health & Science University |
| GA4GH TES on Azure | Microsoft |
| Human Cell Atlas (HCA) Data Portal | Human Cell Atlas |
| NCPI Interoperability Projects and partners | NIH Cloud Platform Interoperability (NCPI) effort |
| TESK | ELIXIR Cloud and AAI |
Publications
Documents
| Date | Title |
|---|---|
| 12 March 2024 | 2024 Cloud Work Stream Roadmap |
| 14 September 2023 | Code of Ethics and Community Conduct (CECC) |
| 8 June 2020 | Cloud APIs comic (v4.0) |
Contributors
Don't see your name..?
Get in touch- Kyle EllrottTask Execution Service (TES) LeadOregon Health & Science University, Portland
- Venkat MalladiTask Execution Service (TES) LeadVerily, South San Francisco, CA, USA
- Salvador Capella-GutierrezBarcelona Supercomputing Center, Barcelona
- Kyle FerriterBroad Institute of MIT and Harvard, Cambridge, US
- Marc FiumeDNAstack, Toronto
- Lakshya GargGoogle Summer of Code
- David GlazerVerily, South San Francisco, CA, USA
- Alexander KanitzUniversity of Basel, Basel, Switzerland
- Patrick MageeDNAstack, Toronto
- Matt McLoughlinMicrosoft, Los Angeles
- Brian O'ConnorNimbus Informatics
- Jonathan TeddsELIXIR, International
- Susheel VarmaInformation Commissioner's Office
- Christina YungOntario Institute for Cancer Research (OICR), Toronto, Canada, Indoc Research, Toronto
Driver Projects
| Title | Thematic Area |
|---|---|
| European Joint Programme on Rare Disease (EJP RD) | Rare Disease |
| ELIXIR Beacon | Rare Disease Cancer Complex Traits Basic Biology |
| ELIXIR Cloud and AAI | Rare Disease Cancer Complex Traits Basic Biology |
| Trans-Omics for Precision Medicine (TOPMed) | Rare Disease Complex Traits Basic Biology |
| Human Cell Atlas | Rare Disease Cancer Complex Traits Basic Biology |