WGS Quality Control Standards describes a set of key quality control metrics and their detailed definitions that can be used as the basis for standardised guidelines for reporting quality control metrics for whole genome sequencing (WGS). Creating a common framework for QC of WGS results is needed to ensure that data generation adheres to published guidelines, and in turn, establishes confidence in the data quality and facilitates the exchange of results across initiatives.
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Benefits
- Improved understanding of how metrics are calculated leading to accurate interpretation and comparison of results
- Directly comparable QC results and assertion of data processing pipeline and workflow functional equivalence
- Mitigate the need to re-do analysis on shared samples
Target users
Researchers, clinical laboratories, data generators, data custodians, and research institutes
Documents
| Date | Title |
|---|---|
| 14 September 2023 | Code of Ethics and Community Conduct (CECC) |
| 6 March 2023 | Meeting minutes: Quality Control of Whole Genome Sequencing |
| 6 March 2023 | Road map: Quality Control of Whole Genome Sequencing |
Contributors
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Get in touch- Nicolas BertinWhole Genome Sequencing (WGS) Quality Control (QC) Standards LeadGenome Institute of Singapore, Singapore
- Justin JeyakaniWhole Genome Sequencing (WGS) Quality Control (QC) Standards LeadPrecision Health Research, Singapore (Precise), Singapore
- Linda XiangWhole Genome Sequencing (WGS) Quality Control (QC) Standards LeadOntario Institute for Cancer Research (OICR), Toronto, Canada
- Gabriela AguiletaCNAG CRG, Barcelona, Spain
- Daniel CameronIllumina, Inc., San Diego
- Mélanie CourtotOntario Institute for Cancer Research (OICR), Toronto, Canada
- Ivo GutCNAG CRG, Barcelona, Spain
- Maxime HebrardPrecision Health Research, Singapore (Precise), Singapore
- Oliver HofmannUniversity of Melbourne Centre for Cancer Research, Melbourne
- Sehrish KanwalUniversity of Melbourne Centre for Cancer Research, Melbourne
- Christian MarshallThe Hospital for Sick Children, Toronto
- Jukka MatilainenEuformatics, Espoo
- Mamana MbiyavangaUniversity of Cape Town, Cape Town
- Sean MckenzieOxford Nanopore Technologies
- Helen MitchellUniversity of Melbourne Centre for Cancer Research, Melbourne
- Andrew PattersonUniversity of Melbourne Centre for Cancer Research, Melbourne
- Bala PeriaswamyOxford Nanopore Technologies Singapore
- Billy RowellPacific Biosciences, Menlo Park
- Chadi SaadQatar Genome Programme, Ar-Rayyan, Qatar
- Lindsay SmithThe Hospital for Sick Children, Toronto
- Miranda StobbeCNAG CRG, Barcelona, Spain
- Edmund SuOntario Institute for Cancer Research (OICR), Toronto, Canada
- Reggan ThomasEMBL's European Bioinformatics Institute (EBI), Hinxton, UK
- Rodrigo ToroPrecision Health Research, Singapore (Precise), Singapore
- Richard WintleThe Hospital for Sick Children, Toronto