GA4GH Large Scale Genomics Work Stream
Minutes and Actions
These are the minutes for the GA4GH Large Scale Genomics Work Stream, which currently mainly meets through its sub-groups. The minutes for these documents are linked below.
Sub-Group Minutes and Actions Documents
This Work Stream has meetings for the following sub groups. These tend to be the regular meetings within the Work Stream.
- File Formats: 2017 - 2018 - 2019 - 2020 - 2022 - 2023 - 2024
- Htsget API: 2017/2018 - 2019 - 2020 - 2021–2024
- RNASeq: December 2017/2018 - 2019 - 2020 - 2021-2022 - 2023 - 2024
- Refget API (jointly with the Genomics Knowledge Standards): 2017/2018 - 2019 - 2020 - 2021-2022 - 2023 - 2024
- Encrypted Format: 2018 - 2019 - 2020 - 2021-2022 - 2023 -2024
- Future of VCF: (2018 combined with File Formats) - 2019 - 2020 - 2021-2022 -2023 -2024
2018-10-04: Basel Face to Face Meeting
2018-03-12: Group Progress Report
Meeting Protocols
- Please note that by participating in meetings, attendees agree to adhere to the GA4GH Standards of Professional Conduct.
- Meetings may be recorded for note-taking purposes. Recordings will be deleted within three months of the meeting taking place.
- Dates should be specified in the international format yyyy-mm-dd
Agendas, Minutes & Actions
2018-10-04: Basel Face to Face Meeting
8am Mexico Room, Basel Conference Centre
Chair: Oliver Hofmann, Thomas Keane
Attendees “Name (Affiliation)”:
Actions Arising | Assigned To | Deadline | |
1 | |||
2 |
Agenda Item | Person/Time | |
1. | Welcome & Confirm Agenda | Thomas, Oliver / 10 |
2. | Htsget updates | 20 |
3. | RNASeq (slides) | Sean Upchurch / 15 |
4. | Refget updates (slides) | 10 |
5. | Read Format Changes
| 20 |
6. | Encrypted Format Discussions - overview (separate meeting happening) | 5 |
7. | Future of VCF - overview (separate meeting happening) | 5 |
8. | ||
9. | ||
A.O.B. | 5 |
2018-03-12: Group Progress Report
Chair: Thomas Keane, Oliver Hofmann
Attendees “Name (Affiliation)”:
Timothy Tickle (driver project HCA)
Andy Yates (EMBL-EBI)
Heidi Sofia (NIH-NHGRI)
Jordi Rambla (ELIXIR Beacon & EGA/ENA/EVA)
Matthew Laird (EMBL-EBI)
Oliver Hofmann (LSG / Australian Genomics)
Jason Walker (VICC / WUSTL)
Barbara Wold (Caltech)
Sean Upchurch (Caltech)
Albert Smith (TOPMed/UMich)
Laura Gauthier (Broad Institute)
Actions Arising | Assigned To | Deadline | |
1 | |||
2 |
Agenda Item | Person/Time | |
1. | Welcome & Confirm Agenda | Chairs / 3 |
2. | Large Scale Genomics Work Stream Overview link | Thomas/Oliver / 12 |
3. | Roadmap progress from Sub Groups (5 minutes each)
| 25 |
4. | Driver Project reports | 15 |
A.O.B.
| 5 |
Meeting went through items 2,3 - Driver Project reports not discussed in-depth
Timing of the Large Scale Genomics Work Stream meetings probably quarterly
2018-MM-DD: Template
Chair:
Attendees “Name (Affiliation)”:
Actions Arising | Assigned To | Deadline | |
1 | |||
2 |
Agenda Item | Person/Time | |
1. | Welcome & Confirm Agenda | |
2. | Previous Actions Review | |
3. | ||
A.O.B. |